Usage Principles

Oktoberfest provides a high-level API that can be easily executed with a single command by providing a config file. The following outlines how to run a job with the high-level API, the three types of jobs available and examples for configuration and manual transformation of search results.

• Running Oktoberfest
• Configuration
• Retrieving predictions
• Custom search results
• Custom modifications
• Custom in-silico digestion
• Generated outputs
• Features for target / decoy separation